JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2S_chr19_55394745_55412788	0/0	t0017	1891	2	0	0	2	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0018	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0019	1891	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0020	1891	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0021	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0022	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0023	1891	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0024	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0025	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0026	1891	1	0	0	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0027	1891	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2T_chr1_202326657_202346936	1/1	t0001	285	368	93	68	153	16	36	copy fasta	UBE2T	chr1	202326657	202346936
UBE2T_chr1_202326657_202346936	0/0	t0002	285	1	0	0	1	0	0	copy fasta	UBE2T	chr1	202326657	202346936
UBE2T_chr1_202326657_202346936	0/0	t0003	285	1	1	0	0	0	0	copy fasta	UBE2T	chr1	202326657	202346936
UBE2U_chr1_64198623_64272368	1/1	t0001	589	191	61	39	61	5	23	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	t0002	589	128	25	33	54	5	11	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	t0003	589	8	8	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	t0004	589	1	1	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	t0005	589	1	0	0	1	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	t0006	589	1	1	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2V1_chr20_50076124_50118150	0/0	t0001	1667	232	35	43	115	7	32	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0002	1663	55	20	3	32	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0003	1668	35	7	6	14	2	6	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0004	1664	16	0	6	3	5	2	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	1/0	t0005	1667	15	0	6	4	3	1	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0006	1667	11	2	3	1	1	4	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0007	1666	5	4	0	1	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0008	1668	4	2	0	2	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0009	1667	4	2	1	1	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0010	1666	3	2	1	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0011	1667	3	3	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0012	1669	3	2	1	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0013	1667	2	0	0	2	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0014	1669	2	0	0	2	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0015	1668	2	0	0	1	0	1	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0016	1667	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0017	1667	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/1	t0018	1668	1	0	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0019	1669	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0020	1662	1	0	0	1	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	t0021	1667	1	0	0	1	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V2_chr8_48003431_48069708	0/1	t0001	3904	109	26	25	40	5	12	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0002	3904	77	34	15	18	1	9	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	1/0	t0003	3905	11	0	2	4	1	3	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0004	3904	10	0	0	10	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0005	3904	6	6	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0006	3904	5	1	3	0	1	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0007	3905	3	2	0	0	0	1	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0008	3900	3	3	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0009	3905	3	2	1	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708