JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2V2_chr8_48003431_48069708	0/0	t0010	3904	2	2	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0011	3904	2	2	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0012	3904	2	2	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0013	3904	1	0	1	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0014	3904	1	0	0	0	0	1	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0015	3904	1	0	1	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0016	3905	1	0	0	1	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0017	3904	1	0	0	0	0	1	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0018	3904	1	1	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0019	3904	1	1	0	0	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0020	3905	1	0	0	0	0	1	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2V2_chr8_48003431_48069708	0/0	t0021	3904	1	0	0	1	0	0	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2W_chr8_73781219_73883862	0/0	t0001	7927	46	4	14	17	3	8	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0002	7926	25	3	4	15	0	3	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0003	7924	20	1	2	13	0	4	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0004	7925	17	6	2	8	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0005	7914	13	12	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/1	t0006	7914	10	5	4	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0007	7921	9	5	0	4	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0008	7928	8	2	1	4	1	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0009	7917	7	7	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0010	7925	6	0	0	6	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0011	7926	5	0	0	4	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0012	7920	4	0	0	4	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0013	7922	4	1	1	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0014	7915	4	1	1	0	2	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0015	7919	4	4	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0016	7914	3	2	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0017	7923	3	0	0	3	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0018	7915	3	0	0	3	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	1/0	t0019	7924	3	0	0	0	0	2	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0020	7928	3	0	2	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0021	7926	2	2	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0022	7914	2	0	0	0	1	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0023	7914	2	2	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0024	7924	2	0	0	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0025	7925	2	0	0	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0026	7909	2	0	0	1	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0027	7911	2	0	0	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0028	7924	2	2	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0029	7924	2	0	1	0	1	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0030	7924	2	1	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0031	7926	2	0	0	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0032	7938	2	0	0	2	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0033	7927	2	0	1	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0034	7911	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0035	7923	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0036	7924	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0037	7917	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0038	7913	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862