JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2W_chr8_73781219_73883862	0/0	t0039	7926	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0040	7925	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0041	7926	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0042	7926	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0043	7926	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0044	7925	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0045	7926	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0046	7914	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0047	7913	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0048	7913	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0049	7924	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0050	7924	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0051	7924	1	0	0	0	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0052	7925	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0053	7926	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0054	7924	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0055	7906	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0056	7909	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0057	7919	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0058	7923	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0059	7924	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0060	7924	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0061	7925	1	0	0	0	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0062	7927	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0063	7927	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0064	7927	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0065	7928	1	0	0	0	1	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0066	7946	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0067	7926	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0068	7936	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0069	7928	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0070	7925	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0071	7925	1	0	0	1	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0072	7925	1	0	0	0	1	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0073	7919	1	0	1	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0074	7914	1	0	0	0	0	1	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0075	7927	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2W_chr8_73781219_73883862	0/0	t0076	7923	1	1	0	0	0	0	copy fasta	UBE2W	chr8	73781219	73883862
UBE2Z_chr17_48903407_48934056	1/0	t0001	2020	132	60	16	39	3	13	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0002	2020	84	1	10	64	1	8	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0003	2020	37	1	20	1	4	11	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/1	t0004	2021	34	13	8	7	2	3	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0005	2023	15	3	7	0	0	5	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0006	2021	10	0	0	10	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0007	2020	7	7	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0008	2020	3	0	0	3	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0009	2020	1	0	0	1	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0010	2020	1	0	0	1	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0011	2021	1	0	1	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0012	2020	1	0	1	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056