Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C11orf21_chr11_2290628_2306918	0/0	t0007	2433	8	8	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0008	2433	6	5	1	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0009	2433	6	6	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0010	2433	5	0	1	0	2	2	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0011	2433	4	4	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0012	2433	3	1	1	0	0	1	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0013	2433	2	1	1	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0014	2433	1	0	1	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0015	2433	1	0	1	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0016	2433	1	0	0	0	1	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0017	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0018	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0019	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0020	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0021	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0022	2433	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0023	2433	1	0	0	0	0	1	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0024	2433	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0025	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0026	2433	1	0	1	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0027	2433	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0028	2433	1	1	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0029	2433	1	0	0	0	0	1	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0030	2433	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	t0031	2433	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf24_chr11_68256338_68276973	1/0	t0001	722	381	89	63	170	16	42	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/1	t0002	722	13	1	6	5	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0003	722	1	0	0	0	0	1	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0004	722	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0005	722	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0006	722	1	0	0	0	0	1	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0007	722	1	0	1	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	t0008	722	1	0	0	1	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf42_chr11_6200557_6216135	1/1	t0001	153	430	88	80	198	16	46	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	t0002	153	6	0	0	6	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	t0003	153	2	2	0	0	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	t0004	153	2	2	0	0	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf52_chr11_111913913_111931871	1/1	t0001	733	329	72	62	150	6	37	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0002	722	9	9	0	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0003	733	7	7	0	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0004	733	6	2	4	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0005	733	2	0	2	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0006	733	1	1	0	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0007	733	1	0	0	0	0	1	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	t0008	733	1	1	0	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871
C11orf54_chr11_93736672_93769749	0/1	t0001	3214	166	17	33	84	7	24	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0002	3216	48	7	11	7	7	16	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0003	3216	27	5	3	18	0	1	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	1/0	t0004	3216	23	20	2	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0005	3216	20	12	3	4	0	1	copy fasta	C11orf54	chr11	93736672	93769749