JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2Z_chr17_48903407_48934056	0/0	t0013	2020	1	1	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0014	2020	1	1	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0015	2020	1	0	1	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE2Z_chr17_48903407_48934056	0/0	t0016	2020	1	1	0	0	0	0	copy fasta	UBE2Z	chr17	48903407	48934056
UBE3A_chr15_25328728_25444024	0/0	t0001	6109	66	6	10	38	3	9	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0002	6112	50	4	5	35	0	6	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0003	6110	30	4	10	9	1	6	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0004	6107	19	16	2	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0005	6109	12	12	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/1	t0006	6107	10	0	3	0	1	5	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0007	6110	9	0	0	9	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0008	6136	8	0	2	6	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0009	6111	7	7	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0010	6110	6	5	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0011	6110	5	4	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0012	6110	4	4	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0013	6107	4	0	2	0	1	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0014	6109	4	4	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0015	6111	4	0	0	4	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0016	6112	4	0	0	4	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0017	6112	3	3	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0018	6111	3	3	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0019	6111	3	3	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0020	6113	3	0	0	3	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0021	6113	3	3	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0022	6136	2	2	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	1/0	t0023	6110	2	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0024	6106	2	0	1	0	1	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0025	6113	2	2	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0026	6110	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0027	6109	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0028	6107	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0029	6136	1	0	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0030	6136	1	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0031	6110	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0032	6109	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0033	6107	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0034	6112	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0035	6110	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0036	6109	1	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0037	6110	1	0	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0038	6108	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0039	6110	1	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0040	6110	1	0	1	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0041	6111	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0042	6109	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0043	6110	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0044	6110	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0045	6111	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0046	6111	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024