JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE3A_chr15_25328728_25444024	0/0	t0047	6113	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0048	6112	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0049	6113	1	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0050	6112	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0051	6112	1	0	0	0	0	1	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0052	6109	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0053	6107	1	0	0	0	1	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0054	6108	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0055	6106	1	0	0	0	1	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0056	6110	1	0	0	0	1	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0057	6110	1	1	0	0	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	t0058	6109	1	0	0	1	0	0	copy fasta	UBE3A	chr15	25328728	25444024
UBE3B_chr12_109472634_109541702	1/0	t0001	2524	132	23	24	60	6	18	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0002	2524	41	2	9	18	6	6	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0003	2521	30	8	7	14	1	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0004	2521	24	9	6	6	0	3	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0005	2524	13	5	0	6	0	2	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0006	2524	12	12	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0007	2524	11	0	2	9	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/1	t0008	2521	10	1	4	0	1	3	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0009	2521	8	8	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0010	2521	6	3	2	0	1	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0011	2521	5	0	2	0	1	2	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0012	2524	4	4	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0013	2523	3	0	0	3	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0014	2524	2	0	0	2	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0015	2521	2	2	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0016	2524	2	2	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0017	2524	2	0	0	0	0	2	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0018	2524	2	0	0	2	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0019	2524	2	0	2	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0020	2521	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0021	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0022	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0023	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0024	2521	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0025	2524	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0026	2524	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0027	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0028	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0029	2521	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0030	2524	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0031	2524	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0032	2521	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0033	2524	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0034	2524	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0035	2524	1	0	0	1	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	t0036	2524	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3C_chr7_157133926_157274370	0/1	t0001	1963	118	12	28	58	3	16	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	1/0	t0002	1963	97	19	17	51	3	6	copy fasta	UBE3C	chr7	157133926	157274370