JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE3C_chr7_157133926_157274370	0/0	t0003	1963	41	19	3	16	0	3	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0004	1963	10	8	2	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0005	1963	8	2	3	0	0	3	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0006	1963	7	6	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0007	1963	6	6	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0008	1964	4	3	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0009	1960	3	0	3	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0010	1963	2	0	0	2	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0011	1963	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0012	1963	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0013	1963	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0014	1963	2	0	0	2	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0015	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0016	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0017	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0018	1963	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0019	1963	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0020	1963	1	0	0	0	0	1	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0021	1964	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0022	1963	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0023	1963	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0024	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0025	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0026	1963	1	0	0	0	0	1	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0027	1963	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0028	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0029	1963	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0030	1963	1	1	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0031	1963	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	t0032	1963	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3D_chr6_82887390_83070841	1/0	t0001	756	92	21	14	32	6	18	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/1	t0002	756	82	37	18	18	2	6	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	t0003	756	4	0	0	4	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	t0004	756	4	4	0	0	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	t0005	756	3	3	0	0	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	t0006	756	1	1	0	0	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE4A_chr11_118354600_118404211	1/0	t0001	2888	161	53	29	54	12	12	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0002	2889	81	9	7	50	1	14	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0003	2888	23	2	3	15	2	1	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0004	2888	8	8	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/1	t0005	2889	7	0	2	4	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0006	2887	6	0	2	4	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0007	2888	6	6	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0008	2888	5	1	1	3	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0009	2888	4	0	0	0	0	4	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0010	2889	3	1	0	2	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0011	2888	2	1	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0012	2889	2	0	0	2	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0013	2888	2	0	2	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0014	2887	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211