JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE4A_chr11_118354600_118404211	0/0	t0015	2888	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0016	2888	1	0	0	0	0	1	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0017	2889	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0018	2889	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0019	2889	1	0	0	0	0	1	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0020	2889	1	0	0	0	0	1	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0021	2888	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0022	2887	1	0	0	0	1	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	t0023	2889	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4B_chr1_10027958_10186239	0/0	t0001	1996	47	24	2	19	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0002	1997	45	27	3	13	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	1/1	t0003	1997	44	1	16	15	3	7	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0004	1996	26	2	7	13	0	4	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0005	1996	20	7	6	6	0	1	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0006	1996	18	14	3	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0007	1997	6	0	0	0	0	6	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0008	1997	4	1	3	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0009	1996	2	0	0	0	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0010	1996	2	1	0	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0011	1996	2	2	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0012	1996	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0013	1997	1	0	0	0	1	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0014	1997	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0015	1996	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0016	1996	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	t0017	1996	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBFD1_chr16_23552727_23579389	0/0	t0001	3815	112	19	23	53	4	13	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0002	3815	69	3	8	44	6	8	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0003	3816	64	12	14	28	3	7	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	1/1	t0004	3816	25	0	6	11	0	6	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0005	3816	18	13	5	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0006	3817	18	0	8	5	0	5	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0007	3815	7	7	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0008	3815	5	0	1	2	1	1	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0009	3815	5	5	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0010	3816	4	2	0	1	1	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0011	3815	4	4	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0012	3815	3	0	0	3	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0013	3815	3	1	0	2	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0014	3815	2	2	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0015	3816	2	1	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0016	3816	2	0	0	2	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0017	3815	2	2	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0018	3815	2	2	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0019	3815	2	0	0	2	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0020	3815	2	2	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0021	3816	2	0	0	0	0	2	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0022	3816	2	2	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0023	3816	2	0	2	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0024	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389