JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBFD1_chr16_23552727_23579389	0/0	t0025	3815	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0026	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0027	3815	1	0	1	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0028	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0029	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0030	3816	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0031	3816	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0032	3816	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0033	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0034	3815	1	0	0	1	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0035	3815	1	0	0	0	0	1	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0036	3815	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0037	3815	1	0	0	0	0	1	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0038	3817	1	0	0	0	0	1	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0039	3816	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0040	3816	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0041	3815	1	0	0	0	0	1	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	t0042	3816	1	0	0	0	1	0	copy fasta	UBFD1	chr16	23552727	23579389
UBIAD1_chr1_11268198_11293434	1/0	t0001	2638	159	6	36	89	5	22	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/1	t0002	2642	59	19	7	20	4	8	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0003	2642	47	17	3	18	1	8	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0004	2642	29	0	6	22	0	1	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0005	2638	21	19	2	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0006	2642	15	14	1	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0007	2642	8	8	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0008	2638	4	1	3	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0009	2642	3	3	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0010	2642	3	0	3	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0011	2638	2	2	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0012	2642	1	0	0	0	0	1	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0013	2638	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0014	2638	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0015	2642	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0016	2627	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0017	2642	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0018	2642	1	0	0	0	0	1	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0019	2638	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0020	2638	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0021	2638	1	0	1	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0022	2638	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0023	2642	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0024	2638	1	0	0	0	0	1	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	t0025	2642	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBL3_chr13_29759371_29855617	0/0	t0001	3968	107	14	18	61	3	11	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0002	3968	86	14	14	50	3	5	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0003	3968	62	25	12	16	3	6	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/1	t0004	3967	40	1	3	25	3	7	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	1/0	t0005	3964	19	6	5	7	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0006	3968	7	0	0	7	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0007	3968	7	6	1	0	0	0	copy fasta	UBL3	chr13	29759371	29855617