JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBL3_chr13_29759371_29855617	0/0	t0008	3968	6	0	1	0	1	4	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0009	3974	5	5	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0010	3971	5	4	1	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0011	3968	5	0	0	5	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0012	3967	5	0	4	0	1	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0013	3969	4	0	0	3	0	1	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0014	3968	3	3	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0015	3968	3	3	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0016	3974	2	0	0	2	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0017	3968	2	0	0	0	0	2	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0018	3968	2	0	2	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0019	3968	2	2	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0020	3971	1	0	0	0	0	1	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0021	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0022	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0023	3969	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0024	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0025	3968	1	0	0	0	0	1	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0026	3968	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0027	3968	1	0	1	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0028	3968	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0029	3968	1	0	1	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0030	3969	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0031	3968	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0032	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0033	3968	1	0	0	0	0	1	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0034	3968	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0035	3968	1	0	0	0	0	1	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0036	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0037	3964	1	0	1	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0038	3968	1	1	0	0	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	t0039	3968	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL4A_chrX_154478717_154491615	0/1	t0001	1854	187	7	46	103	11	19	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	1/0	t0002	1854	97	63	9	11	0	13	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0003	1854	3	0	0	3	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0004	1854	2	1	0	0	0	1	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0005	1854	2	2	0	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0006	1854	2	0	2	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0007	1854	1	1	0	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0008	1854	1	1	0	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0009	1854	1	1	0	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0010	1854	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0011	1854	1	0	1	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0012	1854	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0013	1858	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0014	1854	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0015	1854	1	0	1	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0016	1854	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0017	1854	1	0	0	0	0	1	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	t0018	1854	1	0	1	0	0	0	copy fasta	UBL4A	chrX	154478717	154491615