JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBL4A_chrX_154478717_154491615	0/0	t0019	1858	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4B_chr1_110107443_110118947	1/1	t0001	981	356	76	53	181	8	36	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0002	981	30	4	16	0	6	4	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0003	981	2	0	0	2	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0004	981	2	2	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0005	981	1	0	0	0	0	1	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0006	951	1	0	0	0	0	1	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0007	904	1	0	1	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0008	981	1	0	0	1	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0009	1046	1	0	0	1	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	t0010	981	1	0	0	1	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL5_chr19_9822918_9835115	1/1	t0001	186	415	100	80	172	14	47	copy fasta	UBL5	chr19	9822918	9835115
UBL5_chr19_9822918_9835115	0/0	t0002	186	1	0	0	0	0	1	copy fasta	UBL5	chr19	9822918	9835115
UBL7_chr15_74440977_74466160	1/1	t0001	267	360	83	55	176	12	32	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	t0002	267	1	1	0	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	t0003	267	1	0	1	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBLCP1_chr5_159258290_159291036	0/0	t0001	1225	55	17	3	29	1	5	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0002	1221	48	10	2	29	2	5	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	1/0	t0003	1223	48	6	9	18	6	8	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0004	1222	48	0	13	25	2	8	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0005	1211	32	10	8	11	1	2	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0006	1227	28	5	8	8	1	6	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0007	1219	18	5	1	12	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0008	1224	15	0	4	10	1	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0009	1217	12	6	5	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0010	1220	11	2	0	6	0	3	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0011	1229	9	0	3	6	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0012	1218	7	4	1	1	0	1	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0013	1226	5	0	2	3	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0014	1228	4	0	2	2	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/1	t0015	1231	4	0	1	2	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0016	1207	3	3	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0017	1209	3	3	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0018	1215	3	3	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0019	1226	3	0	0	2	0	1	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0020	1216	3	3	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0021	1211	3	0	3	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0022	1213	2	2	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0023	1228	2	0	0	0	0	2	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0024	1225	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0025	1211	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0026	1220	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0027	1233	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0028	1208	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0029	1212	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0030	1221	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0031	1221	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0032	1223	1	0	1	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0033	1223	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0034	1222	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036