JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBLCP1_chr5_159258290_159291036	0/0	t0035	1224	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0036	1235	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0037	1212	1	1	0	0	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0038	1227	1	0	0	0	0	1	copy fasta	UBLCP1	chr5	159258290	159291036
UBLCP1_chr5_159258290_159291036	0/0	t0039	1225	1	0	0	1	0	0	copy fasta	UBLCP1	chr5	159258290	159291036
UBN1_chr16_4842481_4887401	0/0	t0001	3039	111	13	21	58	4	15	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/1	t0002	3039	73	6	15	39	1	11	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0003	3039	37	2	6	18	3	8	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0004	3039	28	27	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0005	3039	19	9	2	5	3	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0006	3039	19	5	6	6	2	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0007	3039	16	16	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0008	3039	12	0	7	3	1	1	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0009	3039	6	0	0	6	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0010	3039	6	0	0	6	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0011	3039	5	2	1	2	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0012	3039	4	0	0	4	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0013	3039	4	2	0	1	0	1	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0014	3039	4	1	0	3	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0015	3039	3	0	0	0	1	2	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0016	3039	3	0	0	3	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0017	3039	2	0	0	2	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0018	3039	2	2	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0019	3039	2	2	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0020	3039	2	2	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0021	3039	2	0	2	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0022	3039	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0023	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0024	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0025	3039	1	0	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0026	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	1/0	t0027	3039	1	0	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0028	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0029	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0030	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0031	3025	1	0	0	0	1	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0032	3039	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0033	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0034	3039	1	0	0	0	0	1	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0035	3039	1	0	0	0	0	1	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0036	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	t0037	3039	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN2_chr7_139226237_139313236	0/0	t0001	10651	31	4	5	13	3	6	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0002	10651	23	2	7	7	0	7	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0003	10653	21	0	3	14	2	2	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0004	10668	8	0	4	3	0	1	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0005	10650	7	7	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0006	10650	7	1	0	3	0	3	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0007	10666	5	0	1	4	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0008	10678	5	0	0	5	0	0	copy fasta	UBN2	chr7	139226237	139313236