Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C11orf54_chr11_93736672_93769749	0/0	t0006	3216	19	0	0	18	0	1	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0007	3216	16	0	0	16	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0008	3217	14	13	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0009	3216	6	5	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0010	3216	5	0	4	0	0	1	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0011	3216	5	5	0	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0012	3214	4	0	4	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0013	3214	2	1	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0014	3216	2	0	0	0	2	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0015	3214	1	0	0	1	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0016	3214	1	0	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0017	3214	1	1	0	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0018	3217	1	1	0	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0019	3216	1	0	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0020	3216	1	1	0	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf54_chr11_93736672_93769749	0/0	t0021	3216	1	0	1	0	0	0	copy fasta	C11orf54	chr11	93736672	93769749
C11orf58_chr11_16733647_16763340	0/0	t0001	3369	126	29	14	64	4	15	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0002	3366	54	2	11	32	1	8	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/1	t0003	3369	27	1	5	15	2	3	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0004	3373	19	0	5	10	3	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0005	3368	18	3	2	13	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0006	3370	15	1	5	8	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0007	3374	11	1	3	0	1	6	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0008	3368	10	10	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0009	3370	9	0	8	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0010	3368	7	7	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0011	3367	6	1	2	3	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0012	3367	5	5	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0013	3367	5	5	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0014	3375	4	0	1	0	2	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0015	3368	4	4	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0016	3368	4	1	3	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	1/0	t0017	3369	4	2	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0018	3366	3	0	0	3	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0019	3374	3	0	1	0	1	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0020	3368	3	1	0	2	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0021	3373	2	0	0	0	1	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0022	3368	2	1	0	0	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0023	3374	2	0	1	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0024	3369	2	2	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0025	3369	2	2	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0026	3365	2	0	0	2	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0027	3366	2	0	0	2	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0028	3369	2	0	1	0	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0029	3372	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0030	3369	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0031	3367	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0032	3366	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0033	3368	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0034	3365	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340