JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBN2_chr7_139226237_139313236	0/0	t0109	10653	1	0	0	1	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0110	10652	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	t0111	10650	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBOX5_chr20_3102573_3164865	0/0	t0001	2674	94	22	2	61	2	7	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0002	2676	78	4	17	49	0	8	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0003	2676	56	8	18	14	4	12	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/1	t0004	2673	40	0	25	0	5	9	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0005	2676	11	5	1	2	0	3	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0006	2675	11	10	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0007	2675	10	1	5	0	4	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0008	2676	8	8	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0009	2676	6	5	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0010	2677	5	0	1	3	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0011	2675	5	0	1	3	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0012	2675	5	0	0	4	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0013	2675	5	0	1	3	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0014	2675	5	5	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0015	2674	5	4	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0016	2674	4	4	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0017	2675	3	3	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0018	2676	3	0	2	0	1	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0019	2673	3	1	0	2	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0020	2675	3	0	1	2	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0021	2677	2	0	0	0	0	2	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0022	2675	2	0	0	0	0	2	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0023	2675	2	2	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0024	2675	2	0	2	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0025	2675	2	2	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0026	2675	2	1	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0027	2676	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0028	2676	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0029	2676	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0030	2675	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0031	2676	1	0	0	0	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0032	2676	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0033	2675	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0034	2675	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	1/0	t0035	2675	1	0	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0036	2654	1	0	0	1	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0037	2674	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	t0038	2675	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBP1_chr3_33383336_33445405	1/1	t0001	2553	186	47	28	80	9	20	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0002	2553	100	7	15	66	2	10	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0003	2553	23	21	2	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0004	2553	14	3	6	3	0	2	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0005	2553	6	0	0	6	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0006	2553	4	4	0	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0007	2553	3	2	0	0	0	1	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0008	2553	3	0	1	0	0	2	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0009	2553	2	0	0	2	0	0	copy fasta	UBP1	chr3	33383336	33445405