JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBP1_chr3_33383336_33445405	0/0	t0010	2553	2	0	2	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0011	2553	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0012	2553	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0013	2553	1	0	0	0	1	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0014	2553	1	1	0	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0015	2553	1	1	0	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0016	2553	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0017	2553	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0018	2553	1	0	0	0	0	1	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	t0019	2553	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBQLN1_chr9_83654968_83712958	0/0	t0001	2099	118	21	16	71	2	8	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	1/0	t0002	2099	82	30	14	21	4	12	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0003	2098	37	17	11	0	3	6	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/1	t0004	2099	22	1	9	5	2	4	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0005	2100	17	0	0	16	0	1	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0006	2099	6	6	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0007	2099	6	6	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0008	2099	3	2	1	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0009	2099	2	2	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0010	2098	2	0	0	0	0	2	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0011	2099	2	2	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0012	2099	1	0	0	0	1	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0013	2099	1	0	0	0	0	1	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0014	2099	1	0	0	1	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0015	2099	1	0	0	1	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0016	2099	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0017	2099	1	0	0	0	0	1	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0018	2099	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0019	2099	1	0	0	1	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0020	2099	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0021	2099	1	0	0	0	0	1	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	t0022	2099	1	0	1	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN2_chrX_56558627_56572868	1/1	t0001	2368	283	69	56	121	9	26	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0002	2364	2	0	2	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0003	2368	1	0	1	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0004	2369	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0005	2368	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0006	2368	1	0	0	0	0	1	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0007	2368	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0008	2368	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0009	2367	1	1	0	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	t0010	2368	1	0	0	0	0	1	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN3_chr11_5502300_5514957	1/1	t0001	412	377	87	70	174	13	31	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	t0002	412	86	6	12	50	2	16	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	t0003	412	5	5	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	t0004	412	3	0	0	0	0	3	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	t0005	412	2	0	1	0	1	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	t0006	412	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN4_chr1_156030299_156058798	0/0	t0001	1777	124	16	15	71	8	14	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0002	1777	111	19	33	29	6	24	copy fasta	UBQLN4	chr1	156030299	156058798