JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBQLN4_chr1_156030299_156058798	1/0	t0003	1777	49	45	0	1	0	2	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/1	t0004	1777	23	3	7	6	0	6	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0005	1777	4	4	0	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0006	1777	2	0	2	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0007	1777	1	1	0	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0008	1777	1	0	0	0	0	1	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0009	1777	1	0	1	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0010	1777	1	0	0	1	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0011	1777	1	0	0	0	0	1	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0012	1777	1	0	1	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	t0013	1777	1	0	1	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLNL_chr11_5509393_5521699	1/1	t0001	880	239	53	54	84	11	35	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0002	880	143	19	28	81	5	10	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0003	880	66	19	3	41	0	3	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0004	880	4	4	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0005	880	2	0	0	2	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0006	880	2	1	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0007	880	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0008	880	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0009	880	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	t0010	880	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBR1_chr15_42937897_43111038	0/1	t0001	2449	165	26	25	86	7	20	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	1/0	t0002	2449	62	14	7	34	1	5	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0003	2449	21	17	0	4	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0004	2449	10	9	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0005	2449	4	0	0	4	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0006	2449	3	3	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0007	2449	2	0	0	2	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0008	2449	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0009	2449	1	0	0	0	0	1	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0010	2449	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0011	2449	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0012	2449	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0013	2449	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0014	2449	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	t0015	2449	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR2_chr6_42559029_42698505	0/0	t0001	2624	100	21	13	52	5	9	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0002	2623	76	11	14	47	0	4	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0003	2624	57	20	14	19	1	3	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/1	t0004	2626	57	21	10	12	1	12	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	1/0	t0005	2624	13	1	5	0	2	4	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0006	2624	5	0	0	5	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0007	2624	4	0	0	4	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0008	2623	3	0	0	3	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0009	2625	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0010	2624	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0011	2625	2	2	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0012	2626	2	0	0	2	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0013	2624	1	0	0	0	0	1	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0014	2624	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505