JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBR2_chr6_42559029_42698505	0/0	t0015	2625	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0016	2623	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0017	2623	1	0	0	0	1	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0018	2624	1	0	1	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0019	2624	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0020	2623	1	0	0	0	0	1	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0021	2625	1	0	1	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0022	2625	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0023	2625	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0024	2625	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0025	2625	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0026	2626	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0027	2625	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0028	2653	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	t0029	2623	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR3_chr2_169822454_170089131	0/1	t0001	2346	78	8	21	31	5	12	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0002	2352	76	11	12	40	1	12	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0003	2343	35	18	10	4	2	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0004	2343	31	7	0	24	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0005	2346	16	12	3	0	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0006	2346	15	0	1	12	2	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0007	2352	13	11	0	2	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0008	2352	10	0	0	5	0	5	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0009	2346	6	0	1	4	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0010	2343	6	6	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0011	2346	4	3	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0012	2343	4	4	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0013	2346	4	0	0	4	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0014	2352	3	2	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0015	2352	3	2	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0016	2346	2	2	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0017	2352	2	0	0	1	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	1/0	t0018	2343	2	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0019	2343	2	0	0	1	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0020	2346	1	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0021	2343	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0022	2346	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0023	2343	1	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0024	2352	1	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0025	2346	1	0	0	0	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0026	2346	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0027	2343	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0028	2352	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0029	2346	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0030	2343	1	1	0	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	t0031	2343	1	0	0	0	0	1	copy fasta	UBR3	chr2	169822454	170089131
UBR4_chr1_19069510_19215266	1/1	t0001	341	323	95	58	126	10	32	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	t0002	341	3	1	0	0	0	2	copy fasta	UBR4	chr1	19069510	19215266
UBR5_chr8_102247273_102417700	1/1	t0001	2496	290	76	59	121	10	22	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0002	2496	17	3	3	2	2	7	copy fasta	UBR5	chr8	102247273	102417700