JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBR5_chr8_102247273_102417700	0/0	t0003	2500	5	4	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0004	2496	5	4	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0005	2496	3	0	0	3	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0006	2496	3	0	0	0	2	1	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0007	2496	1	0	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0008	2496	1	0	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0009	2496	1	0	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0010	2496	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	t0011	2496	1	0	1	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR7_chr14_93202256_93234215	0/1	t0001	2217	148	18	29	67	7	26	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0002	2217	77	3	23	40	5	6	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0003	2217	69	25	4	30	4	6	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0004	2217	39	2	12	19	1	5	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0005	2217	26	17	6	1	0	2	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0006	2217	10	10	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0007	2217	7	6	1	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0008	2217	5	4	1	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0009	2217	4	4	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0010	2217	4	0	0	4	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0011	2217	2	2	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0012	2217	2	0	0	2	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0013	2217	2	2	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0014	2217	2	0	2	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0015	2217	2	0	0	0	0	2	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0016	2217	1	0	1	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0017	2217	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0018	2217	1	0	0	0	1	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0019	2217	1	1	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0020	2217	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0021	2217	1	0	1	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0022	2217	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0023	2217	1	0	0	0	0	1	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0024	2217	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	t0025	2217	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBTD1_chr10_97493924_97576206	0/1	t0001	964	288	71	66	115	9	26	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0002	964	6	6	0	0	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	1/0	t0003	964	5	2	0	0	1	1	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0004	964	4	4	0	0	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0005	964	3	0	0	3	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0006	964	2	0	0	2	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0007	964	2	2	0	0	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0008	921	1	0	0	1	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0009	964	1	0	0	1	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0010	964	1	0	0	0	0	1	copy fasta	UBTD1	chr10	97493924	97576206
UBTD1_chr10_97493924_97576206	0/0	t0011	964	1	1	0	0	0	0	copy fasta	UBTD1	chr10	97493924	97576206
UBTD2_chr5_172204646_172288764	0/0	t0001	2273	119	29	16	58	6	10	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/1	t0002	2279	51	1	21	23	1	4	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0003	2274	49	17	2	30	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0004	2264	37	3	12	16	0	6	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0005	2279	21	7	0	14	0	0	copy fasta	UBTD2	chr5	172204646	172288764