JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBTD2_chr5_172204646_172288764	0/0	t0006	2274	9	4	1	0	0	4	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0007	2264	6	0	5	0	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0008	2274	6	1	2	0	0	3	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0009	2289	6	6	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0010	2274	5	0	1	0	3	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0011	2268	5	2	1	0	1	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0012	2269	5	0	0	5	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0013	2275	5	2	1	0	0	2	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0014	2278	5	0	2	3	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0015	2274	4	2	0	1	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0016	2279	4	4	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0017	2279	4	0	0	4	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0018	2284	4	4	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0019	2273	3	1	0	2	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0020	2279	3	0	3	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0021	2274	2	0	1	0	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0022	2274	2	2	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0023	2284	2	0	1	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0024	2289	2	2	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0025	2279	1	0	1	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0026	2279	1	0	0	0	1	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0027	2273	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0028	2264	1	1	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0029	2264	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0030	2264	1	1	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0031	2264	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0032	2264	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0033	2273	1	0	0	1	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0034	2274	1	0	1	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0035	2274	1	0	0	0	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0036	2279	1	0	1	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	1/0	t0037	2284	1	0	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0038	2284	1	1	0	0	0	0	copy fasta	UBTD2	chr5	172204646	172288764
UBTD2_chr5_172204646_172288764	0/0	t0039	2285	1	0	0	0	0	1	copy fasta	UBTD2	chr5	172204646	172288764
UBTF_chr17_44200040_44224675	0/1	t0001	2495	129	3	33	53	10	29	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0002	2501	108	21	17	59	3	8	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0003	2491	19	0	3	16	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0004	2499	12	11	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0005	2507	10	10	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0006	2490	8	7	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0007	2495	7	7	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0008	2501	6	5	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0009	2509	6	6	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0010	2495	6	6	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0011	2501	5	0	0	5	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0012	2501	4	0	1	3	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0013	2499	4	0	2	2	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0014	2500	4	1	0	2	1	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0015	2503	3	2	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0016	2494	3	0	0	2	1	0	copy fasta	UBTF	chr17	44200040	44224675