JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBTF_chr17_44200040_44224675	0/0	t0017	2501	3	2	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0018	2495	2	0	0	0	0	2	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0019	2501	2	1	0	0	0	1	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0020	2501	2	0	0	2	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0021	2506	2	2	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0022	2501	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0023	2489	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0024	2501	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0025	2495	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0026	2499	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0027	2495	1	0	0	0	0	1	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0028	2491	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0029	2493	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0030	2495	1	0	0	0	1	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0031	2495	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0032	2495	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0033	2493	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0034	2499	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0035	2501	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0036	2501	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0037	2501	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0038	2503	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0039	2503	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0040	2509	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0041	2495	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0042	2498	1	0	1	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0043	2495	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0044	2496	1	0	0	0	0	1	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0045	2504	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0046	2498	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	t0047	2493	1	1	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	1/0	t0048	2501	1	0	0	0	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBXN10_chr1_20181096_20201050	1/1	t0001	4720	154	33	32	56	9	22	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0002	4720	129	24	23	67	2	13	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0003	4720	65	0	9	51	1	4	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0004	4721	8	7	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0005	4720	6	5	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0006	4720	5	1	1	0	0	3	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0007	4720	5	0	0	5	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0008	4719	4	0	1	0	0	3	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0009	4719	4	4	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0010	4720	3	2	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0011	4720	2	0	0	2	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0012	4720	2	0	2	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0013	4720	2	2	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0014	4720	2	1	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0015	4720	2	0	2	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0016	4720	1	0	0	1	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0017	4720	1	0	0	0	1	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0018	4720	1	0	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050