JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBXN10_chr1_20181096_20201050	0/0	t0019	4720	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0020	4720	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0021	4720	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0022	4720	1	0	0	1	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0023	4720	1	0	0	1	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0024	4720	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0025	4720	1	0	0	1	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0026	4720	1	0	1	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0027	4720	1	1	0	0	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0028	4720	1	0	0	1	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0029	4719	1	0	0	0	1	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	t0030	4721	1	0	0	0	0	1	copy fasta	UBXN10	chr1	20181096	20201050
UBXN11_chr1_26277282_26311636	1/1	t0001	98	291	80	53	114	12	30	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	t0002	98	78	4	19	45	4	6	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	t0003	98	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN1_chr11_62671500_62684073	1/1	t0001	241	331	91	70	120	10	38	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	t0002	241	1	1	0	0	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN2A_chr2_23935463_24009909	0/0	t0001	5242	61	10	13	24	4	10	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	1/1	t0002	5243	40	6	5	19	3	5	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0003	5244	17	2	6	5	0	4	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0004	5241	15	0	6	6	1	2	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0005	5243	14	13	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0006	5240	9	8	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0007	5242	9	9	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0008	5242	8	0	5	1	1	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0009	5241	8	2	2	2	1	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0010	5243	6	2	3	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0011	5242	6	0	2	0	2	2	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0012	5242	4	0	0	4	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0013	5242	4	1	1	2	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0014	5240	4	0	2	1	1	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0015	5243	3	2	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0016	5244	3	0	0	0	0	3	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0017	5243	3	0	1	2	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0018	5243	2	2	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0019	5242	2	0	1	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0020	5243	2	2	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0021	5245	2	2	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0022	5243	2	0	0	2	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0023	5243	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0024	5242	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0025	5243	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0026	5244	1	0	0	0	1	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0027	5244	1	0	0	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0028	5242	1	0	0	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0029	5242	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0030	5243	1	0	0	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0031	5241	1	0	0	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0032	5242	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0033	5242	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909