JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBXN2A_chr2_23935463_24009909	0/0	t0034	5242	1	0	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0035	5242	1	0	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0036	5242	1	0	0	1	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0037	5245	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0038	5244	1	0	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0039	5242	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0040	5243	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0041	5243	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0042	5241	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0043	5241	1	0	1	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0044	5239	1	0	0	0	1	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0045	5240	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0046	5243	1	0	0	0	1	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0047	5244	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	t0048	5243	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2B_chr8_58406361_58456501	1/1	t0001	3976	90	21	19	31	5	12	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0002	3976	79	11	18	41	2	7	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0003	3973	74	12	9	42	4	7	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0004	3976	61	8	2	50	0	1	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0005	3977	35	17	6	3	1	8	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0006	3976	15	0	2	11	0	2	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0007	3977	9	7	2	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0008	3976	5	0	5	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0009	3976	5	0	0	5	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0010	3976	4	0	0	4	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0011	3974	3	0	0	3	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0012	3976	3	3	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0013	3976	3	0	0	0	0	3	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0014	3976	2	2	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0015	3976	2	0	0	0	2	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0016	3976	2	1	1	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0017	3977	2	0	0	2	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0018	3976	2	2	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0019	3976	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0020	3976	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0021	3976	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0022	3976	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0023	3976	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0024	3976	1	0	1	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0025	3976	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0026	3973	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0027	3973	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0028	3976	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0029	3973	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0030	3976	1	1	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0031	3977	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0032	3977	1	0	1	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0033	3977	1	0	1	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0034	3977	1	0	0	0	0	1	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	t0035	3977	1	0	0	0	0	1	copy fasta	UBXN2B	chr8	58406361	58456501