JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBXN2B_chr8_58406361_58456501	0/0	t0036	3976	1	0	1	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN4_chr2_135736855_135790056	0/1	t0001	2245	160	26	25	91	3	14	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0002	2246	80	12	23	33	3	9	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0003	2243	73	22	9	35	0	7	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0004	2245	25	15	4	4	0	2	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0005	2246	11	2	0	6	0	3	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0006	2246	4	4	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0007	2243	2	2	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0008	2245	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0009	2245	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0010	2245	1	0	1	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0011	2245	1	1	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0012	2245	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0013	2243	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0014	2243	1	1	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0015	2245	1	1	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0016	2245	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0017	2244	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0018	2246	1	0	1	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0019	2246	1	0	1	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	1/0	t0020	2245	1	0	0	0	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0021	2245	1	0	0	0	0	1	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	t0022	2243	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN6_chr19_4440006_4462794	0/0	t0001	590	217	37	41	106	9	24	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	1/0	t0002	590	142	44	21	48	9	19	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0003	589	33	3	18	11	0	1	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0004	589	15	6	2	4	0	3	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0005	590	4	4	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0006	590	4	4	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0007	590	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0008	590	1	0	0	0	0	1	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/1	t0009	590	1	0	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0010	590	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	t0011	589	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN7_chr3_196342662_196437427	0/0	t0001	9079	54	3	14	26	4	7	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0002	9052	40	21	5	10	2	2	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0003	9080	27	3	9	8	3	4	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0004	9052	14	0	10	2	1	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0005	9052	8	1	4	0	0	3	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0006	9085	8	0	0	6	0	2	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0007	9080	7	7	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0008	9079	6	0	0	5	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/1	t0009	9053	5	0	0	0	1	3	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0010	9081	5	5	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0011	9052	4	3	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0012	9053	4	4	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0013	9052	4	4	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0014	9051	4	2	0	1	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0015	9084	4	0	0	0	4	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0016	9052	3	0	0	3	0	0	copy fasta	UBXN7	chr3	196342662	196437427