Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C11orf58_chr11_16733647_16763340	0/0	t0035	3369	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0036	3367	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0037	3366	1	0	0	0	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0038	3368	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0039	3368	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0040	3366	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0041	3366	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0042	3369	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0043	3369	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0044	3367	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0045	3363	1	0	0	0	1	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0046	3370	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0047	3370	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0048	3370	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0049	3370	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0050	3369	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0051	3370	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0052	3369	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0053	3366	1	0	1	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0054	3368	1	0	0	0	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0055	3369	1	0	0	0	0	1	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0056	3369	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0057	3367	1	1	0	0	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0058	3369	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf58_chr11_16733647_16763340	0/0	t0059	3366	1	0	0	1	0	0	copy fasta	C11orf58	chr11	16733647	16763340
C11orf65_chr11_108377755_108472529	1/1	t0001	335	322	85	53	133	14	35	copy fasta	C11orf65	chr11	108377755	108472529
C11orf65_chr11_108377755_108472529	0/0	t0002	335	4	3	1	0	0	0	copy fasta	C11orf65	chr11	108377755	108472529
C11orf65_chr11_108377755_108472529	0/0	t0003	335	2	0	0	2	0	0	copy fasta	C11orf65	chr11	108377755	108472529
C11orf65_chr11_108377755_108472529	0/0	t0004	335	1	0	0	0	0	1	copy fasta	C11orf65	chr11	108377755	108472529
C11orf65_chr11_108377755_108472529	0/0	t0005	335	1	0	0	1	0	0	copy fasta	C11orf65	chr11	108377755	108472529
C11orf68_chr11_65911810_65924062	0/1	t0001	681	337	61	70	153	14	38	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0002	681	20	5	0	15	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0003	681	14	12	2	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0004	681	7	0	0	7	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	1/0	t0005	681	7	6	0	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0006	681	7	6	1	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0007	681	3	3	0	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0008	681	3	3	0	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0009	681	3	0	0	3	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0010	681	3	3	0	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0011	681	1	0	1	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf68_chr11_65911810_65924062	0/0	t0012	681	1	1	0	0	0	0	copy fasta	C11orf68	chr11	65911810	65924062
C11orf71_chr11_114393532_114405511	0/0	t0001	1609	141	31	20	71	3	16	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/1	t0002	1608	84	15	14	49	1	4	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	1/0	t0003	1609	80	12	20	27	5	15	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/0	t0004	1608	58	13	10	31	0	4	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/0	t0005	1608	22	3	11	0	1	7	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/0	t0006	1608	9	9	0	0	0	0	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/0	t0007	1604	7	6	1	0	0	0	copy fasta	C11orf71	chr11	114393532	114405511
C11orf71_chr11_114393532_114405511	0/0	t0008	1609	4	1	1	0	2	0	copy fasta	C11orf71	chr11	114393532	114405511