JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBXN7_chr3_196342662_196437427	0/0	t0017	9085	3	3	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0018	9052	3	3	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0019	9052	3	0	2	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0020	9084	3	0	3	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0021	9079	3	1	0	2	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0022	9076	3	3	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0023	9055	2	2	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0024	9082	2	0	1	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0025	9071	2	0	0	2	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0026	9080	2	0	0	0	0	2	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0027	9079	2	2	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0028	9052	2	2	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0029	9084	2	1	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0030	9079	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0031	9080	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0032	9079	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0033	9085	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0034	9070	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0035	9080	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0036	9080	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0037	9052	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0038	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0039	9047	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0040	9052	1	0	0	0	1	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0041	9052	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0042	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0043	9082	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0044	9081	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0045	9053	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0046	9090	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0047	9086	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0048	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0049	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0050	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0051	9052	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0052	9080	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0053	9080	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0054	9047	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0055	9051	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0056	9084	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	1/0	t0057	9052	1	0	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0058	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0059	9052	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0060	9095	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0061	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0062	9081	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0063	9052	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0064	9079	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0065	9079	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0066	9078	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427