JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBXN7_chr3_196342662_196437427	0/0	t0067	9074	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0068	9078	1	0	0	1	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0069	9084	1	0	1	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0070	9079	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0071	9079	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0072	9080	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0073	9090	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	t0074	9076	1	1	0	0	0	0	copy fasta	UBXN7	chr3	196342662	196437427
UBXN8_chr8_30739164_30772006	0/1	t0001	639	255	72	56	96	8	22	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	1/0	t0002	639	9	8	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	t0003	639	9	9	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	t0004	639	1	1	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UCHL1_chr4_41251928_41273455	1/1	t0001	432	276	64	45	125	9	31	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0002	432	71	18	8	37	5	3	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0003	432	64	5	17	36	0	6	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0004	432	6	4	2	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0005	432	2	2	0	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0006	432	2	0	2	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0007	432	1	1	0	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0008	432	1	1	0	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	t0009	432	1	1	0	0	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL3_chr13_75544791_75611020	1/1	t0001	239	260	65	56	109	6	22	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	t0002	239	41	5	7	11	2	16	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	t0003	239	19	17	2	0	0	0	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	t0004	239	4	4	0	0	0	0	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	t0005	239	2	1	1	0	0	0	copy fasta	UCHL3	chr13	75544791	75611020
UCHL5_chr1_193007254_193064360	1/1	t0001	4198	237	65	33	112	9	16	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0002	4198	35	1	7	17	2	8	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0003	4198	7	1	5	0	1	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0004	4198	7	7	0	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0005	4197	5	0	0	4	0	1	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0006	4198	4	0	0	0	0	4	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0007	4206	3	0	0	3	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0008	4198	3	2	1	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0009	4206	2	0	0	2	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0010	4198	1	1	0	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0011	4198	1	1	0	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0012	4198	1	0	0	1	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0013	4198	1	0	0	1	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	t0014	4198	1	0	0	0	0	1	copy fasta	UCHL5	chr1	193007254	193064360
UCK1_chr9_131518801_131536263	0/0	t0001	1325	204	15	39	105	8	37	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/1	t0002	1329	71	18	18	27	1	6	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0003	1329	60	28	5	22	3	2	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0004	1322	17	1	8	0	6	2	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0005	1351	12	0	0	12	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0006	1329	9	8	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0007	1329	9	8	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0008	1329	5	5	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0009	1325	4	0	0	4	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0010	1355	3	3	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263