JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UCK1_chr9_131518801_131536263	0/0	t0011	1329	3	1	0	2	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0012	1325	3	0	0	3	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0013	1329	3	2	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0014	1329	2	2	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0015	1329	2	1	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0016	1325	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0017	1325	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0018	1355	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0019	1329	1	0	0	0	0	1	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0020	1325	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0021	1325	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0022	1329	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0023	1325	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0024	1355	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0025	1355	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0026	1322	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0027	1329	1	0	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0028	1329	1	0	0	1	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0029	1329	1	0	1	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0030	1329	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	t0031	1329	1	1	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	1/0	t0032	1329	1	0	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK2_chr1_165822614_165916618	0/0	t0001	4016	89	6	26	45	4	8	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0002	4015	43	11	10	8	4	10	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0003	4015	33	0	8	19	1	5	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0004	4015	29	16	2	10	1	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0005	4015	22	1	6	12	1	2	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0006	4015	22	22	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0007	4015	15	2	6	0	2	5	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0008	4016	10	0	3	4	0	3	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0009	4015	9	9	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0010	4015	6	0	0	6	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0011	4015	6	0	0	6	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0012	4016	4	4	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0013	4015	3	3	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0014	4015	3	0	0	3	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0015	4015	2	0	0	2	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0016	4015	2	2	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0017	4015	2	2	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0018	4016	1	0	0	1	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0019	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0020	4015	1	0	0	1	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0021	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0022	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0023	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0024	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0025	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0026	4016	1	0	0	1	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0027	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0028	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618