JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UCK2_chr1_165822614_165916618	0/0	t0029	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0030	4015	1	0	0	0	0	1	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0031	4015	1	0	0	1	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0032	4015	1	0	0	0	1	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0033	4016	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0034	4015	1	0	1	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0035	4016	1	0	0	1	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0036	4015	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	t0037	4016	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCKL1_chr20_63934829_63961416	1/1	t0001	192	353	96	72	121	14	48	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	t0002	192	2	0	0	2	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	t0003	192	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCMA_chr10_13216766_13239374	1/1	t0001	454	407	94	63	192	17	39	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	t0002	454	43	1	21	15	1	5	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	t0003	454	8	0	0	8	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	t0004	454	5	1	0	4	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	t0005	454	1	0	0	1	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCN2_chr3_48556718_48568781	1/1	t0001	1160	205	39	60	74	7	23	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0002	1153	34	8	0	24	1	1	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0003	1160	24	24	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0004	1153	15	0	7	1	4	3	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0005	1160	8	0	8	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0006	1088	5	2	1	0	0	2	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0007	1160	3	3	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0008	1160	1	0	0	0	0	1	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0009	1160	1	1	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0010	1160	1	1	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0011	1160	1	0	0	1	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0012	1160	1	0	0	0	0	1	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0013	1160	1	1	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0014	1088	1	1	0	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	t0015	1160	1	0	0	0	0	1	copy fasta	UCN2	chr3	48556718	48568781
UCN3_chr10_5359966_5379692	1/0	t0001	758	159	35	20	86	5	12	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/1	t0002	758	118	32	25	32	6	22	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0003	758	60	0	19	40	1	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0004	758	29	0	0	27	2	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0005	757	19	0	0	18	0	1	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0006	759	18	3	5	7	2	1	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0007	759	16	1	2	6	0	7	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0008	758	11	1	7	0	0	3	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0009	757	8	0	2	6	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0010	758	7	7	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0011	758	4	4	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0012	759	3	0	0	3	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0013	759	2	0	2	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0014	759	2	0	0	2	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0015	778	2	2	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0016	797	1	0	0	1	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0017	778	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0018	779	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692