JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UCN3_chr10_5359966_5379692	0/0	t0019	779	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0020	778	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0021	779	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0022	780	1	0	1	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0023	759	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0024	758	1	0	1	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	t0025	759	1	1	0	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN_chr2_27302400_27313445	1/1	t0001	421	307	82	65	107	12	39	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	t0002	421	6	5	1	0	0	0	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	t0003	421	3	3	0	0	0	0	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	t0004	421	3	0	2	0	0	1	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	t0005	421	2	0	1	1	0	0	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	t0006	421	1	0	1	0	0	0	copy fasta	UCN	chr2	27302400	27313445
UCP1_chr4_140554431_140573961	1/1	t0001	698	255	49	33	143	5	23	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0002	699	98	22	21	44	2	9	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0003	699	32	0	9	16	1	6	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0004	698	10	2	6	0	2	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0005	698	8	6	2	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0006	698	7	7	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0007	697	6	6	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0008	698	2	0	0	2	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0009	698	2	2	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0010	698	1	0	0	1	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0011	698	1	0	1	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0012	699	1	1	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	t0013	699	1	1	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP2_chr11_73969672_73987843	1/1	t0001	715	239	36	41	122	9	29	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0002	760	90	23	25	30	5	7	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0003	760	37	1	2	31	2	1	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0004	715	10	1	5	0	0	4	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0005	715	9	8	1	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0006	715	9	8	1	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0007	728	6	6	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0008	715	6	6	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0009	715	2	0	0	2	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0010	728	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0011	715	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0012	715	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0013	715	1	0	0	0	0	1	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0014	715	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0015	715	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0016	715	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0017	715	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0018	715	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0019	760	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0020	760	1	0	1	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	t0021	759	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP3_chr11_73995277_74014085	0/1	t0001	1340	172	14	36	93	7	21	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0002	1339	148	49	30	51	6	12	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0003	1339	99	23	9	53	3	11	copy fasta	UCP3	chr11	73995277	74014085