JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UCP3_chr11_73995277_74014085	0/0	t0004	1340	12	10	1	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0005	1339	4	0	1	2	0	1	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0006	1340	3	0	0	3	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0007	1339	1	0	0	0	0	1	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0008	1340	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0009	1340	1	0	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0010	1340	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	1/0	t0011	1339	1	0	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0012	1319	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0013	1339	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	t0014	1339	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UEVLD_chr11_18524609_18593734	0/1	t0001	2792	140	50	28	43	4	14	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0002	2793	87	18	20	38	3	8	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0003	2792	75	0	13	53	1	8	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0004	2792	55	1	6	41	1	6	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0005	2792	16	15	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	1/0	t0006	2792	4	3	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0007	2792	3	1	2	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0008	2792	3	0	0	3	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0009	2790	3	3	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0010	2792	2	0	1	0	1	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0011	2792	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0012	2792	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0013	2793	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0014	2792	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0015	2792	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0016	2792	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0017	2793	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0018	2793	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0019	2793	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0020	2792	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0021	2793	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	t0022	2792	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UFC1_chr1_161148978_161163856	1/1	t0001	385	364	78	56	182	16	30	copy fasta	UFC1	chr1	161148978	161163856
UFC1_chr1_161148978_161163856	0/0	t0002	385	4	0	2	0	0	2	copy fasta	UFC1	chr1	161148978	161163856
UFD1_chr22_19444911_19484193	1/0	t0001	868	299	75	42	154	8	19	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/1	t0002	869	94	7	26	45	4	11	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	t0003	869	7	7	0	0	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	t0004	868	1	1	0	0	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	t0005	869	1	0	0	1	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFL1_chr6_96516806_96560276	1/1	t0001	1842	290	64	45	143	6	30	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0002	1842	47	4	11	20	5	7	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0003	1842	6	0	0	6	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0004	1842	6	1	3	0	2	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0005	1842	5	5	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0006	1842	4	3	1	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0007	1842	3	0	0	3	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0008	1842	2	0	1	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0009	1842	2	0	1	0	1	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0010	1842	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276