JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UFL1_chr6_96516806_96560276	0/0	t0011	1842	2	2	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0012	1842	2	1	1	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0013	1842	1	0	0	1	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0014	1842	1	0	0	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0015	1842	1	0	0	1	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0016	1842	1	1	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0017	1842	1	0	0	1	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0018	1842	1	0	1	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0019	1842	1	0	0	1	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0020	1842	1	1	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0021	1842	1	1	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0022	1842	1	1	0	0	0	0	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	t0023	1842	1	0	0	0	0	1	copy fasta	UFL1	chr6	96516806	96560276
UFM1_chr13_38344851_38368619	0/1	t0001	2910	182	21	36	88	11	25	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0002	2911	27	25	2	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0003	2905	12	11	1	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0004	2909	9	9	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0005	2911	7	3	1	2	0	1	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0006	2910	5	5	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0007	2909	5	4	1	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0008	2909	4	0	0	2	1	1	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0009	2909	4	4	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0010	2911	3	3	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	1/0	t0011	2911	3	2	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0012	2911	3	3	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0013	2910	2	0	0	0	0	2	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0014	2910	2	0	2	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0015	2911	2	2	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0016	2911	2	1	0	0	0	1	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0017	2911	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0018	2910	1	0	0	0	1	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0019	2909	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0020	2911	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0021	2910	1	0	0	0	1	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0022	2910	1	0	1	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0023	2911	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0024	2909	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0025	2909	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0026	2910	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0027	2912	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0028	2911	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0029	2910	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0030	2909	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0031	2910	1	0	0	1	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFM1_chr13_38344851_38368619	0/0	t0032	2909	1	1	0	0	0	0	copy fasta	UFM1	chr13	38344851	38368619
UFSP1_chr7_100883721_100894715	1/1	t0001	567	384	79	69	174	16	44	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0002	567	15	15	0	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0003	567	1	0	1	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0004	567	1	0	0	1	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0005	567	1	1	0	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715