JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UFSP1_chr7_100883721_100894715	0/0	t0006	567	1	1	0	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0007	567	1	0	0	1	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0008	567	1	1	0	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP1_chr7_100883721_100894715	0/0	t0009	567	1	1	0	0	0	0	copy fasta	UFSP1	chr7	100883721	100894715
UFSP2_chr4_185394537_185430964	0/0	t0001	952	121	12	30	54	9	16	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/1	t0002	952	57	28	14	4	2	8	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0003	952	41	15	1	18	1	6	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0004	952	25	3	0	19	0	3	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0005	952	24	20	3	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0006	952	11	6	2	1	0	2	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0007	952	4	0	0	2	0	2	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0008	952	2	2	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0009	952	2	0	0	0	0	2	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0010	952	2	2	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	1/0	t0011	952	1	0	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0012	952	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0013	952	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0014	952	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0015	952	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0016	952	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0017	952	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0018	952	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0019	952	1	0	0	1	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0020	952	1	0	0	0	0	1	copy fasta	UFSP2	chr4	185394537	185430964
UFSP2_chr4_185394537_185430964	0/0	t0021	952	1	1	0	0	0	0	copy fasta	UFSP2	chr4	185394537	185430964
UGCG_chr9_111891814_111940369	0/0	t0001	2774	91	10	16	57	4	4	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0002	2784	63	2	19	30	4	8	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	1/1	t0003	2775	36	1	15	6	4	8	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0004	2772	24	0	0	21	2	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0005	2771	23	22	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0006	2774	19	13	3	3	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0007	2774	17	0	0	15	0	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0008	2775	12	0	0	11	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0009	2774	10	3	0	6	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0010	2775	9	1	5	0	1	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0011	2783	8	0	0	6	0	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0012	2794	7	7	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0013	2775	6	0	1	2	1	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0014	2782	5	0	3	2	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0015	2772	5	1	0	4	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0016	2785	4	3	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0017	2785	4	3	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0018	2784	4	0	0	3	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0019	2771	4	4	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0020	2775	4	1	0	3	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0021	2774	4	0	2	0	0	2	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0022	2774	4	0	2	1	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0023	2794	3	3	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0024	2784	3	0	0	3	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0025	2774	3	2	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369