JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGCG_chr9_111891814_111940369	0/0	t0026	2775	3	2	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0027	2774	3	2	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0028	2781	2	2	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0029	2773	2	0	0	2	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0030	2775	2	2	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0031	2775	2	0	0	2	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0032	2785	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0033	2781	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0034	2784	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0035	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0036	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0037	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0038	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0039	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0040	2785	1	0	0	0	1	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0041	2784	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0042	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0043	2775	1	0	0	0	1	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0044	2772	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0045	2775	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0046	2774	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0047	2774	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0048	2776	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0049	2784	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0050	2775	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0051	2771	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0052	2776	1	0	0	0	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0053	2774	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0054	2774	1	0	0	0	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0055	2775	1	0	1	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0056	2774	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0057	2775	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0058	2775	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0059	2771	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0060	2774	1	0	0	0	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0061	2771	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0062	2776	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0063	2771	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0064	2774	1	0	0	0	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0065	2775	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0066	2775	1	0	0	0	0	1	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0067	2770	1	1	0	0	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0068	2771	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGCG_chr9_111891814_111940369	0/0	t0069	2772	1	0	0	1	0	0	copy fasta	UGCG	chr9	111891814	111940369
UGDH_chr4_39493755_39532439	0/1	t0001	1550	80	1	22	35	5	16	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0002	1553	52	20	12	15	3	2	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0003	1551	50	15	3	31	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0004	1552	34	3	8	16	1	6	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0005	1550	32	0	3	25	2	2	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	1/0	t0006	1553	30	23	3	0	1	2	copy fasta	UGDH	chr4	39493755	39532439