JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGDH_chr4_39493755_39532439	0/0	t0007	1554	25	3	1	19	0	2	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0008	1552	11	2	2	7	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0009	1550	11	0	2	6	0	3	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0010	1550	11	0	6	1	1	3	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0011	1552	6	0	1	3	0	2	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0012	1554	6	0	0	6	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0013	1551	6	5	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0014	1550	4	0	0	4	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0015	1550	4	0	0	4	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0016	1551	4	1	3	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0017	1552	4	0	1	1	1	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0018	1551	4	2	1	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0019	1550	3	3	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0020	1553	3	0	1	2	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0021	1553	2	0	1	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0022	1551	2	2	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0023	1551	2	2	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0024	1552	2	0	2	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0025	1552	2	1	1	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0026	1554	2	1	0	0	1	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0027	1549	1	0	0	0	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0028	1550	1	0	0	0	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0029	1549	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0030	1551	1	0	0	0	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0031	1551	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0032	1553	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0033	1553	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0034	1554	1	0	1	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0035	1550	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0036	1551	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0037	1553	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0038	1553	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0039	1553	1	0	0	0	0	1	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0040	1550	1	0	0	0	1	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0041	1550	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0042	1550	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0043	1551	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0044	1551	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0045	1552	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0046	1553	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0047	1553	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0048	1553	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0049	1553	1	1	0	0	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGDH_chr4_39493755_39532439	0/0	t0050	1550	1	0	0	1	0	0	copy fasta	UGDH	chr4	39493755	39532439
UGGT1_chr2_128086200_128200677	1/1	t0001	6094	71	18	16	26	3	6	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0002	6094	48	4	7	31	2	4	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0003	6092	38	4	4	24	0	6	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0004	6095	24	3	5	15	1	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0005	6093	16	7	3	2	2	2	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0006	6092	14	10	1	0	1	2	copy fasta	UGGT1	chr2	128086200	128200677