JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGGT1_chr2_128086200_128200677	0/0	t0057	6094	1	0	1	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0058	6094	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0059	6094	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0060	6092	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0061	6097	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0062	6095	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0063	6093	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0064	6094	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0065	6091	1	1	0	0	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0066	6094	1	0	0	1	0	0	copy fasta	UGGT1	chr2	128086200	128200677
UGGT1_chr2_128086200_128200677	0/0	t0067	6094	1	0	0	0	0	1	copy fasta	UGGT1	chr2	128086200	128200677
UGGT2_chr13_95796580_96058401	1/1	t0001	300	324	82	45	154	11	30	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	t0002	298	3	3	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	t0003	300	3	0	2	0	1	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	t0004	300	2	1	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGP2_chr2_63836896_63896560	1/1	t0001	624	275	85	58	86	16	28	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	t0002	624	39	2	14	14	1	8	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	t0003	623	18	7	2	2	1	6	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	t0004	624	2	0	0	2	0	0	copy fasta	UGP2	chr2	63836896	63896560
UGT1A10_chr2_233631448_233778300	0/1	t0001	817	201	36	42	81	6	35	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	1/0	t0002	817	66	23	7	22	6	7	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0003	817	21	20	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0004	817	6	5	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0005	817	3	3	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0006	817	2	1	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0007	817	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0008	817	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	t0009	866	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A1_chr2_233755270_233778300	0/1	t0001	760	287	39	52	145	11	39	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	1/0	t0002	760	87	25	12	33	7	9	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0003	760	24	23	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0004	760	6	5	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0005	760	3	3	0	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0006	760	2	0	0	2	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0007	760	2	1	0	1	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	t0008	809	1	0	0	1	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0001	827	146	36	32	46	5	27	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/1	t0002	827	89	3	11	57	5	12	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	1/0	t0003	827	39	4	8	14	4	8	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0004	827	36	19	1	13	2	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0005	827	23	22	1	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0006	827	6	6	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0007	827	3	3	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0008	827	3	0	0	3	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0009	876	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0010	827	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0011	827	1	0	1	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0012	827	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	t0013	827	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A4_chr2_233713736_233778300	0/1	t0001	827	218	39	40	92	10	36	copy fasta	UGT1A4	chr2	233713736	233778300