JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT1A4_chr2_233713736_233778300	1/0	t0002	827	73	25	8	25	6	8	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0003	827	25	24	1	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0004	827	7	6	1	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0005	827	3	3	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0006	827	2	0	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0007	827	2	1	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0008	876	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	t0009	827	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A5_chr2_233707907_233778300	0/1	t0001	827	215	39	40	89	10	36	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	1/0	t0002	827	74	25	8	26	6	8	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0003	827	24	23	1	0	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0004	827	7	6	1	0	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0005	827	3	3	0	0	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0006	827	2	0	0	2	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0007	827	2	1	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0008	876	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0009	827	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	t0010	827	1	1	0	0	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A6_chr2_233687890_233778300	0/1	t0001	857	215	39	40	92	8	35	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	1/0	t0002	857	78	25	10	27	6	9	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0003	857	25	24	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0004	857	7	6	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0005	857	3	3	0	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0006	857	2	1	0	1	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0007	857	1	0	0	1	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	t0008	906	1	0	0	1	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A7_chr2_233676901_233778300	0/1	t0001	779	212	38	39	90	8	36	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	1/0	t0002	779	70	23	7	25	6	8	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0003	779	24	23	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0004	779	7	6	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0005	779	3	3	0	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0006	779	2	1	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0007	779	1	0	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	t0008	828	1	0	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A8_chr2_233612633_233778300	0/1	t0001	817	194	35	41	76	6	35	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	1/0	t0002	817	57	20	7	18	4	7	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0003	817	19	18	1	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0004	817	6	5	1	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0005	817	3	3	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0006	817	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0007	817	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0008	817	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0009	817	2	1	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0010	817	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0011	817	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	t0012	866	1	0	0	1	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A9_chr2_233666898_233778300	0/1	t0001	779	214	37	41	90	9	36	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	1/0	t0002	779	67	23	7	21	7	8	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0003	779	23	22	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0004	779	6	5	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300