JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT1A9_chr2_233666898_233778300	0/0	t0005	779	3	3	0	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0006	779	2	1	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0007	779	1	1	0	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0008	779	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	t0009	828	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT2A1_chr4_69583417_69658247	0/0	t0001	1070	239	44	50	112	9	24	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	1/1	t0002	1070	107	15	22	49	5	14	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0003	1070	15	15	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0004	1070	3	0	0	3	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0005	1070	2	2	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0006	1070	2	2	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0007	1070	2	2	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0008	1070	2	1	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0009	1070	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0010	1070	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0011	1070	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	t0012	1070	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A2_chr4_69583417_69644642	0/0	t0001	958	241	44	48	113	9	27	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	1/1	t0002	958	109	15	23	49	5	15	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0003	958	15	15	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0004	958	3	0	0	3	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0005	958	2	2	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0006	958	2	2	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0007	958	2	2	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0008	958	2	1	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0009	958	1	0	0	1	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	t0010	958	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A3_chr4_68923463_68956804	0/0	t0001	1395	159	36	31	80	4	8	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0002	1394	104	1	14	76	3	10	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/1	t0003	1394	97	15	31	29	5	16	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0004	1395	53	6	0	41	0	6	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0005	1394	22	21	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0006	1395	5	4	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0007	1395	3	3	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0008	1395	3	3	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0009	1395	2	0	1	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0010	1395	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0011	1395	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0012	1394	1	0	0	1	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0013	1395	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0014	1395	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0015	1395	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0016	1394	1	0	0	1	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0017	1394	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0018	1394	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0019	1394	1	1	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	t0020	1395	1	0	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2B10_chr4_68810994_68837023	0/1	t0001	1171	298	56	40	154	11	36	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0002	1171	64	3	27	28	2	4	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0003	1171	55	6	5	41	1	2	copy fasta	UGT2B10	chr4	68810994	68837023