JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT2B10_chr4_68810994_68837023	0/0	t0004	1171	9	8	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0005	1171	8	8	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0006	1171	7	0	0	7	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0007	1171	6	6	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0008	1171	6	3	0	0	0	3	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0009	1171	4	3	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0010	1171	2	0	0	0	2	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0011	1171	1	0	0	0	0	1	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	t0012	1171	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B11_chr4_69194951_69219748	1/0	t0001	516	142	32	25	62	8	14	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0002	515	90	20	14	49	3	4	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0003	515	52	14	12	21	0	5	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0004	516	26	0	1	24	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0005	522	18	0	3	13	0	2	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0006	517	16	3	7	3	2	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/1	t0007	516	9	3	1	3	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0008	516	8	3	1	2	0	2	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0009	514	8	4	0	4	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0010	515	7	0	0	7	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0011	517	6	0	1	5	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0012	518	5	2	0	0	0	3	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0013	515	5	3	2	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0014	517	3	0	0	0	0	3	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0015	514	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0016	518	2	0	0	2	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0017	515	2	0	0	2	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0018	514	2	0	2	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0019	515	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0020	514	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0021	526	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0022	516	1	0	1	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0023	517	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	t0024	516	1	0	0	0	1	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B15_chr4_68641597_68675652	0/0	t0001	544	200	42	30	108	5	15	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/1	t0002	543	96	6	22	36	10	21	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0003	544	54	0	1	51	0	2	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0004	542	31	28	3	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0005	543	28	4	15	1	3	5	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0006	543	13	9	0	3	0	1	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0007	544	5	5	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0008	543	2	0	1	0	0	1	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0009	543	2	1	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0010	544	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0011	544	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0012	543	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0013	543	1	0	0	0	0	1	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0014	543	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	t0015	543	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B17_chr4_68532173_68581322	0/0	t0001	889	29	19	7	0	0	3	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0002	889	9	9	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322