JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT2B17_chr4_68532173_68581322	0/0	t0003	889	7	3	2	1	1	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0004	889	6	6	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0005	889	4	3	1	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0006	889	3	0	2	0	1	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	1/0	t0007	889	2	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0008	889	2	2	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0009	889	1	0	0	0	0	1	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0010	889	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/1	t0011	889	1	0	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	t0012	889	1	0	0	1	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B28_chr4_69275475_69300050	1/0	t0001	268	256	42	44	137	14	18	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	t0002	268	2	0	0	0	0	2	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	t0003	242	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B4_chr4_69475165_69500905	0/0	t0001	514	192	19	39	107	1	26	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/1	t0002	514	151	30	15	87	5	13	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	1/0	t0003	514	70	27	20	10	9	3	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0004	514	10	10	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0005	514	7	7	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0006	514	2	2	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0007	514	1	1	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0008	514	1	1	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0009	514	1	0	0	0	1	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	t0010	514	1	1	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B7_chr4_69091474_69117987	0/1	t0001	300	255	44	51	127	8	24	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	1/0	t0002	299	145	26	25	66	6	21	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0003	301	10	8	2	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0004	300	7	7	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0005	300	3	3	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0006	300	2	0	0	2	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0007	299	1	0	0	1	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	t0008	299	1	0	0	0	0	1	copy fasta	UGT2B7	chr4	69091474	69117987
UGT3A1_chr5_35946006_35996390	0/0	t0001	3347	130	3	15	95	2	15	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0002	3347	48	5	12	16	5	10	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/1	t0003	3347	28	7	2	12	0	6	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0004	3347	26	13	0	10	0	3	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0005	3347	24	5	11	3	3	2	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0006	3347	21	1	1	19	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0007	3347	15	13	2	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0008	3347	11	0	7	0	2	2	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0009	3347	11	0	7	0	2	2	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0010	3347	9	0	0	9	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0011	3347	7	0	0	7	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0012	3347	7	7	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0013	3347	6	6	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0014	3347	5	4	1	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0015	3347	5	5	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0016	3347	5	5	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0017	3347	4	4	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0018	3347	4	4	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0019	3347	4	4	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390