JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT3A1_chr5_35946006_35996390	0/0	t0020	3347	3	0	3	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0021	3347	3	0	0	3	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0022	3347	2	0	0	2	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	1/0	t0023	3347	2	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0024	3347	2	0	0	2	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0025	3347	1	0	1	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0026	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0027	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0028	3347	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0029	3347	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0030	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0031	3347	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0032	3347	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0033	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0034	3347	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0035	3347	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0036	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0037	3347	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0038	3347	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0039	3347	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	t0040	3347	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A2_chr5_36030021_36071882	1/0	t0001	771	182	44	18	103	0	16	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/1	t0002	771	138	14	50	39	14	20	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0003	771	32	9	4	18	0	1	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0004	771	20	18	2	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0005	771	19	0	1	18	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0006	771	5	0	0	5	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0007	771	5	0	0	5	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0008	771	1	0	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0009	771	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0010	771	1	0	0	0	0	1	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0011	771	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0012	771	1	0	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0013	771	1	0	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0014	771	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0015	771	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	t0016	771	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT8_chr4_114593807_114683225	0/1	t0001	2108	106	20	25	44	6	10	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0002	2108	68	4	12	38	5	9	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	1/0	t0003	2108	30	23	6	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0004	2110	13	11	2	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0005	2110	12	0	3	8	1	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0006	2108	10	9	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0007	2114	7	0	0	7	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0008	2108	6	0	2	0	2	2	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0009	2108	6	6	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0010	2106	4	3	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0011	2108	3	3	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0012	2108	2	1	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0013	2108	2	0	0	0	0	2	copy fasta	UGT8	chr4	114593807	114683225