JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UGT8_chr4_114593807_114683225	0/0	t0014	2108	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0015	2106	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0016	2106	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0017	2110	1	0	0	1	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0018	2108	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0019	2108	1	0	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0020	2108	1	0	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0021	2106	1	0	1	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0022	2106	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0023	2108	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	t0024	2108	1	0	0	0	0	1	copy fasta	UGT8	chr4	114593807	114683225
UHMK1_chr1_162492818_162534631	0/0	t0001	7264	131	36	17	60	5	13	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0002	7264	103	11	20	55	4	13	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0003	7263	57	3	19	29	1	5	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0004	7264	16	0	0	16	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	1/0	t0005	7265	14	0	5	0	3	5	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0006	7263	7	0	0	7	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0007	7263	5	0	0	4	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0008	7264	5	0	0	5	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0009	7264	4	4	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0010	7264	4	4	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0011	7264	4	0	0	4	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0012	7264	4	4	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0013	7264	3	2	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0014	7265	3	3	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0015	7265	3	3	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0016	7263	2	0	1	0	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0017	7265	2	2	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0018	7264	2	0	0	2	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0019	7264	2	2	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0020	7264	2	2	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0021	7264	2	2	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0022	7264	2	0	1	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0023	7264	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0024	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0025	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0026	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0027	7264	1	0	0	0	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0028	7265	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0029	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0030	7265	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0031	7264	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0032	7263	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0033	7263	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0034	7263	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0035	7263	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0036	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0037	7590	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0038	7264	1	0	0	0	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0039	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631