JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UHMK1_chr1_162492818_162534631	0/0	t0040	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0041	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0042	7263	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0043	7265	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0044	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0045	7263	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0046	7264	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0047	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0048	7265	1	1	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0049	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0050	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0051	7264	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/1	t0052	7264	1	0	0	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0053	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0054	7264	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0055	7263	1	0	0	1	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0056	7264	1	0	0	0	1	0	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	t0057	7264	1	0	1	0	0	0	copy fasta	UHMK1	chr1	162492818	162534631
UHRF1_chr19_4904501_4967154	0/1	t0001	1516	81	23	38	5	4	10	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0002	1516	56	1	6	42	2	5	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0003	1516	50	22	11	1	3	13	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	1/0	t0004	1517	31	0	9	19	1	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0005	1516	19	0	4	9	0	6	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0006	1517	18	7	0	8	0	3	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0007	1517	6	4	0	0	0	2	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0008	1516	5	5	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0009	1517	5	5	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0010	1516	3	3	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0011	1517	3	3	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0012	1516	3	3	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0013	1517	3	0	3	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0014	1516	2	0	1	0	1	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0015	1517	2	1	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0016	1516	2	2	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0017	1516	2	0	0	0	1	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0018	1517	2	1	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0019	1517	2	1	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0020	1517	2	2	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0021	1517	2	1	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0022	1516	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0023	1516	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0024	1516	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0025	1516	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0026	1517	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0027	1517	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0028	1517	1	0	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0029	1517	1	0	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0030	1516	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0031	1516	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0032	1517	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154