JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UHRF1_chr19_4904501_4967154	0/0	t0033	1517	1	0	1	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0034	1517	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0035	1516	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0036	1516	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0037	1517	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	t0038	1517	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF2_chr9_6408199_6512054	1/1	t0001	1168	313	87	56	125	9	34	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	t0002	1168	1	0	0	0	1	0	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	t0003	1168	1	1	0	0	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	t0004	1168	1	0	1	0	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	t0005	1168	1	0	1	0	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UHRF2_chr9_6408199_6512054	0/0	t0006	1168	1	0	0	1	0	0	copy fasta	UHRF2	chr9	6408199	6512054
UIMC1_chr5_176900006_177011779	1/1	t0001	415	320	79	58	138	14	29	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	t0002	416	6	1	0	4	0	1	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	t0003	415	2	2	0	0	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	t0004	415	2	0	0	0	0	2	copy fasta	UIMC1	chr5	176900006	177011779
ULBP1_chr6_149958943_149978715	1/1	t0001	2477	238	21	53	124	10	28	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0002	2477	86	2	6	68	0	10	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0003	2476	31	18	7	0	2	4	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0004	2477	8	5	3	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0005	2477	6	6	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0006	2477	6	0	0	0	1	5	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0007	2477	6	5	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0008	2477	5	0	0	5	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0009	2477	5	5	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0010	2477	4	4	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0011	2477	4	4	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0012	2477	4	1	1	1	0	1	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0013	2477	3	2	0	0	1	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0014	2477	3	3	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0015	2477	3	3	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0016	2477	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0017	2477	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0018	2477	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0019	2477	2	1	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0020	2477	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0021	2477	2	2	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0022	2476	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0023	2477	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0024	2477	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0025	2477	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0026	2477	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0027	2477	1	0	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0028	2477	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0029	2477	1	0	0	0	1	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0030	2477	1	0	0	0	0	1	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0031	2477	1	0	0	0	0	1	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0032	2477	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0033	2477	1	0	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0034	2477	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715