Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C11orf87_chr11_109417190_109434167	0/0	t0020	5275	1	1	0	0	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0021	5274	1	0	0	0	0	1	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0022	5274	1	0	0	1	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0023	5274	1	0	0	1	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0024	5274	1	0	0	0	0	1	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0025	5376	1	0	0	1	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0026	5274	1	0	1	0	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0027	5274	1	0	0	1	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0028	5274	1	0	0	1	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0029	5274	1	0	0	0	0	1	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0030	5274	1	0	1	0	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf87_chr11_109417190_109434167	0/0	t0031	5274	1	0	1	0	0	0	copy fasta	C11orf87	chr11	109417190	109434167
C11orf91_chr11_33693261_33705826	0/0	t0001	255	166	25	23	89	9	20	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	1/1	t0002	255	163	2	34	109	3	13	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	t0003	255	128	51	27	31	4	15	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	t0004	255	21	20	1	0	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	t0005	255	1	0	1	0	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf91_chr11_33693261_33705826	0/0	t0006	255	1	0	0	1	0	0	copy fasta	C11orf91	chr11	33693261	33705826
C11orf96_chr11_43937637_43948878	0/1	t0001	874	233	36	39	126	10	21	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	1/0	t0002	874	161	41	30	64	4	21	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0003	874	15	0	1	11	2	1	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0004	874	9	8	1	0	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0005	874	8	6	2	0	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0006	874	4	4	0	0	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0007	874	3	2	1	0	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0008	874	1	0	0	1	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0009	874	1	1	0	0	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0010	874	1	0	0	0	0	1	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0011	874	1	0	0	1	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf96_chr11_43937637_43948878	0/0	t0012	874	1	0	0	1	0	0	copy fasta	C11orf96	chr11	43937637	43948878
C11orf97_chr11_94507461_94537123	1/1	t0001	292	428	97	69	200	12	48	copy fasta	C11orf97	chr11	94507461	94537123
C11orf97_chr11_94507461_94537123	0/0	t0002	292	6	1	3	0	2	0	copy fasta	C11orf97	chr11	94507461	94537123
C11orf98_chr11_62657817_62670210	1/1	t0001	275	243	60	42	117	4	18	copy fasta	C11orf98	chr11	62657817	62670210
C11orf98_chr11_62657817_62670210	0/0	t0002	275	103	5	34	31	11	22	copy fasta	C11orf98	chr11	62657817	62670210
C11orf98_chr11_62657817_62670210	0/0	t0003	269	30	25	4	0	1	0	copy fasta	C11orf98	chr11	62657817	62670210
C11orf98_chr11_62657817_62670210	0/0	t0004	275	4	4	0	0	0	0	copy fasta	C11orf98	chr11	62657817	62670210
C11orf98_chr11_62657817_62670210	0/0	t0005	275	1	0	0	0	0	1	copy fasta	C11orf98	chr11	62657817	62670210
C11orf98_chr11_62657817_62670210	0/0	t0006	275	1	0	0	0	0	1	copy fasta	C11orf98	chr11	62657817	62670210
C12orf40_chr12_39621183_39726914	1/1	t0001	818	344	72	62	159	9	40	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	t0002	818	7	7	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	t0003	814	4	4	0	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	t0004	818	3	1	1	0	1	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	t0005	818	1	0	0	1	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf40_chr12_39621183_39726914	0/0	t0006	818	1	0	1	0	0	0	copy fasta	C12orf40	chr12	39621183	39726914
C12orf42_chr12_103296955_103500968	1/1	t0001	242	176	61	32	60	4	17	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	t0002	242	46	8	4	28	0	6	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	t0003	242	29	0	0	25	0	4	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	t0004	242	4	0	0	4	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	t0005	242	4	4	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	t0006	242	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968