JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ULBP1_chr6_149958943_149978715	0/0	t0035	2477	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0036	2477	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	t0037	2477	1	0	0	0	1	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP2_chr6_149937014_149954235	0/1	t0001	595	431	90	70	213	11	46	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0002	595	3	3	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	1/0	t0003	595	2	0	1	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0004	595	2	1	0	0	1	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0005	595	2	2	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0006	595	2	2	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0007	595	1	0	1	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0008	595	1	0	0	1	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0009	595	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	t0010	595	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP3_chr6_150056053_150074121	0/0	t0001	2374	116	14	26	53	4	19	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0002	2374	78	5	11	48	3	11	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0003	2376	71	2	15	51	1	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0004	2374	27	0	8	11	4	4	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0005	2374	21	14	3	0	1	3	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0006	2374	17	7	2	6	0	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0007	2375	11	0	2	7	1	1	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0008	2374	10	10	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0009	2376	8	8	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0010	2375	6	0	2	4	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0011	2374	6	5	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0012	2375	6	5	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0013	2374	6	6	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0014	2373	5	0	0	4	1	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	1/0	t0015	2377	5	0	2	1	0	1	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0016	2374	5	0	0	5	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0017	2377	3	0	0	3	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0018	2377	3	0	0	3	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0019	2373	3	0	0	2	0	1	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0020	2374	3	0	2	0	1	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0021	2376	2	0	0	2	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0022	2374	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0023	2375	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0024	2375	2	2	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0025	2376	2	0	0	2	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0026	2374	2	2	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0027	2374	2	0	0	2	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0028	2374	2	0	0	2	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0029	2374	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0030	2375	2	0	1	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0031	2374	2	0	2	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0032	2377	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0033	2376	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0034	2373	1	0	0	0	1	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0035	2374	1	0	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0036	2374	1	0	0	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	t0037	2374	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121