JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ULK2_chr17_19765830_19872936	0/0	t0002	6039	41	0	2	35	0	4	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0003	6041	28	0	7	18	2	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0004	6040	21	1	3	17	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0005	6039	9	0	0	9	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0006	6041	7	5	1	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0007	6040	7	6	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0008	6041	5	4	0	0	1	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0009	6040	4	4	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0010	6041	4	0	1	0	2	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0011	6041	4	4	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0012	6039	3	0	0	3	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0013	6038	3	0	0	3	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0014	6041	2	0	2	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0015	6041	2	0	0	2	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0016	6041	2	0	0	2	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0017	6041	2	2	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0018	6041	2	0	0	0	0	2	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0019	6042	2	2	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0020	6040	2	0	0	2	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0021	6040	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0022	6041	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0023	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0024	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0025	6041	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0026	6041	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0027	6041	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0028	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0029	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0030	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0031	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	1/0	t0032	6039	1	0	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0033	6040	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0034	6040	1	0	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0035	6041	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0036	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0037	6041	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0038	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0039	6041	1	0	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0040	6042	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0041	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0042	6041	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0043	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0044	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0045	6052	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0046	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0047	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0048	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0049	6041	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0050	6041	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0051	6040	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936