JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ULK2_chr17_19765830_19872936	0/0	t0052	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0053	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0054	6040	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0055	6039	1	0	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0056	6039	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0057	6039	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0058	6039	1	0	0	0	0	1	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0059	6041	1	0	1	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	t0060	5870	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK3_chr15_74831118_74848156	0/1	t0001	1162	301	50	50	155	14	31	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	1/0	t0002	1162	128	42	17	53	4	11	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0003	1162	3	1	0	2	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0004	1162	3	0	2	0	0	1	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0005	1162	2	1	1	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0006	1162	1	1	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0007	1162	1	0	0	0	0	1	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	t0008	1162	1	1	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK4_chr3_41241599_41967103	0/1	t0001	467	45	18	14	4	2	6	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	1/0	t0002	467	17	14	2	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	t0003	467	4	3	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	t0004	467	3	3	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	t0005	467	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	t0006	467	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
UMAD1_chr7_7635752_7884223	0/0	t0001	1810	21	3	6	8	1	3	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0002	1810	21	1	3	14	0	3	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0003	1822	13	1	1	7	1	3	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	1/0	t0004	1819	11	3	0	6	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0005	1810	9	1	4	3	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0006	1819	8	0	2	4	0	2	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0007	1813	8	2	1	5	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0008	1813	7	3	0	4	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0009	1816	6	1	3	2	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0010	1819	5	0	1	2	0	2	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0011	1813	5	0	0	5	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0012	1810	5	0	1	0	0	4	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0013	1810	5	0	3	0	0	2	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0014	1810	5	3	2	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0015	1825	4	2	1	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0016	1825	4	3	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/1	t0017	1822	4	0	0	1	0	2	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0018	1822	4	0	2	1	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0019	1816	4	0	2	1	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0020	1816	4	2	2	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0021	1813	4	4	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0022	1831	3	1	1	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0023	1825	3	0	1	2	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0024	1819	3	1	2	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0025	1819	3	0	0	0	0	3	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0026	1816	3	1	1	0	1	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0027	1816	3	3	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223