JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UMAD1_chr7_7635752_7884223	0/0	t0028	1816	3	1	1	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0029	1813	3	3	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0030	1828	2	0	0	2	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0031	1825	2	0	0	2	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0032	1822	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0033	1822	2	0	1	0	1	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0034	1822	2	0	2	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0035	1819	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0036	1819	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0037	1816	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0038	1816	2	0	1	0	1	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0039	1819	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0040	1810	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0041	1807	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0042	1807	2	2	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0043	1813	2	1	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0044	1834	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0045	1831	1	0	0	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0046	1831	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0047	1828	1	0	0	0	1	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0048	1828	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0049	1828	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0050	1828	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0051	1822	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0052	1822	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0053	1822	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0054	1822	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0055	1819	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0056	1763	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0057	1816	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0058	1816	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0059	1819	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0060	1819	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0061	1819	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0062	1813	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0063	1813	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0064	1813	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0065	1813	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0066	1810	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0067	1810	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0068	1810	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0069	1810	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0070	1807	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0071	1807	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0072	1804	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0073	1804	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0074	1804	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0075	1795	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0076	1795	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0077	1795	1	0	0	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223