JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UMAD1_chr7_7635752_7884223	0/0	t0078	1795	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0079	1792	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0080	1792	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0081	1810	1	0	1	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0082	1810	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0083	1771	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	t0084	1804	1	1	0	0	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMODL1_chr21_42066317_42147996	1/0	t0001	923	114	50	9	35	2	17	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0002	907	74	7	18	38	1	10	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0003	923	61	3	12	40	2	4	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0004	922	32	0	4	28	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0005	923	30	7	17	0	3	3	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0006	923	10	7	3	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0007	923	8	0	0	8	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0008	922	6	0	1	0	2	3	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0009	922	5	0	2	0	1	2	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0010	922	5	0	5	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0011	923	4	0	0	3	1	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0012	923	4	0	4	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0013	907	4	2	2	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0014	922	3	0	0	3	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0015	907	3	0	0	3	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0016	907	3	0	0	3	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0017	923	2	0	0	2	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0018	922	2	0	0	2	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0019	922	2	0	1	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0020	923	2	2	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0021	923	2	2	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0022	923	2	2	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0023	923	2	2	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/1	t0024	907	2	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0025	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0026	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0027	923	1	0	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0028	922	1	0	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0029	922	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0030	922	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0031	922	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0032	922	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0033	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0034	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0035	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0036	923	1	0	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0037	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0038	923	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0039	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0040	923	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0041	907	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	t0042	907	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMOD_chr16_20328051_20357715	1/1	t0001	393	358	82	68	152	15	39	copy fasta	UMOD	chr16	20328051	20357715