JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UMOD_chr16_20328051_20357715	0/0	t0002	393	25	0	5	15	0	5	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	t0003	393	13	8	3	0	0	2	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	t0004	393	5	5	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	t0005	393	1	0	0	1	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	t0006	393	1	0	0	0	1	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	t0007	393	1	1	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMPS_chr3_124725452_124754273	0/0	t0001	5195	81	8	16	46	5	6	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0002	5205	49	3	9	31	3	3	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0003	5216	22	0	2	17	1	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0004	5218	22	0	3	18	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0005	5220	20	5	1	11	1	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0006	5214	17	2	5	9	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0007	5222	15	4	2	8	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0008	5197	10	0	0	7	0	3	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0009	5207	9	0	4	5	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0010	5218	8	0	2	3	0	3	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0011	5211	8	0	0	7	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0012	5216	7	0	1	4	0	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0013	5208	7	0	5	0	2	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0014	5192	7	5	1	0	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/1	t0015	5222	6	0	2	0	1	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0016	5224	5	2	0	2	1	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0017	5217	5	2	0	2	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0018	5197	5	0	0	5	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0019	5214	4	0	2	1	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0020	5212	4	0	1	1	0	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0021	5212	4	0	4	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0022	5221	4	4	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0023	5189	4	1	3	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0024	5192	4	3	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0025	5204	4	3	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	1/0	t0026	5210	3	1	0	0	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0027	5215	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0028	5217	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0029	5219	3	2	0	1	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0030	5206	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0031	5199	3	0	0	3	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0032	5210	2	0	0	0	0	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0033	5220	2	0	1	1	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0034	5212	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0035	5211	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0036	5213	2	1	0	1	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0037	5210	2	0	0	0	2	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0038	5209	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0039	5218	2	0	0	0	0	2	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0040	5190	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0041	5192	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0042	5209	2	0	2	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0043	5198	2	2	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0044	5222	2	0	0	2	0	0	copy fasta	UMPS	chr3	124725452	124754273